Cloud apps overview
What are cloud apps and how do you use them?
Tag: Notebooks
Introducing the Workbench JupyterLab app
The new JupyterLab app is a powerful application for data analysis.
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Cloud app operations
Operations that can be performed on cloud apps through the Verily Workbench web UI
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Access, browse, save, and share data
How to work with your workspace data in Verily Workbench
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Start a workspace in Verily Workbench
Quickstart guide to workspaces in the web UI
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Get started with Nextflow on Verily Workbench
Step-by-step instructions for running a Nextflow pipeline
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Workbench CLI commands
Detailed explanations about the Workbench CLI commands and their options
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Git integrations with cloud apps
Working with Git and GitHub
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Git repositories in notebooks
Examples related to using Git repositories in your notebook apps with the Workbench CLI
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Query OMOP data in BigQuery
Examples of querying OMOP data in BigQuery using the CMS SynPuf dataset
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Use cloud apps for analysis
Cloud app options available in Verily Workbench
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Use the Workbench CLI from a container
Build a custom container and use it to run Workbench CLI commands
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Create container images in a workspace
How to use Cloud Build or Docker to create container images from within a workspace
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Use Dataproc (Spark) and Hail on Verily Workbench
Run a Dataproc (managed Spark) cluster via the web UI or Workbench CLI
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Install and run Quarto on Verily Workbench
Use Quarto's CLI in a cloud app
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Run AlphaFold from a notebook
Use AlphaFold's container image to run a notebook instance