Command-line interface

Learn about the capabilities of the Workbench CLI (command-line interface)

Command-line interface overview

Purpose and capabilities of the Workbench CLI

Install and run the Workbench CLI

Get started with installing and running the Workbench CLI

Basic usage

Examples of typical operations performed via the Workbench CLI

Workbench CLI commands

Detailed explanations about the Workbench CLI commands and their options

Git repositories in notebooks

Examples related to using Git repositories in your notebook apps with the Workbench CLI

Work with workspace context environment variables

Use the workspace context environment variables via the Workbench CLI

Use the Workbench CLI from a container

Build a custom container and use it to run Workbench CLI commands

Nextflow

Examples related to running Nextflow workflows via the Workbench CLI

Last Modified: 16 July 2024